In this tutorial you will learn how to create a 3D object.
Start Visual Studio 2005 or later
Choose File->New->Project... from the menu.
In the New Project dialog box, choose Visual C#->Windows Forms Application.
Type the project name as "Loading a DICOMDIR to Create a 3D Object" in the Project Name field, and then choose OK. If desired, type a new location for your project or select a directory using the Browse button, and then choose OK.
From View menu > choose Solution explorer.
On the Solution explorer tree, right click on the References node and select Add Reference.
On the Add Reference dialog, select the Browse tab, and add the following dll's.
Switch to Form1 code view (right-click Form1 in the solution explorer then select View Code ) and add the following lines at the beginning of the file:
Imports LeadtoolsImports Leadtools.CodecsImports Leadtools.MedicalViewerImports Leadtools.Medical3DImports Leadtools.Dicom
using Leadtools;using Leadtools.Codecs;using Leadtools.MedicalViewer;using Leadtools.Medical3D;using Leadtools.Dicom;
In Form1 create a new method InitClass()
Private Sub InitClass()Dim MY_LICENSE_FILE As String = "d:\temp\TestLic.lic"' Unlock DICOM supportDim MY_DicomDEVELOPER_KEY As String = "xyz123abc"RasterSupport.SetLicense(MY_LICENSE_FILE, MY_DicomDEVELOPER_KEY);' Unlock Medical supportDim MY_MedicalDEVELOPER_KEY As String = "abc123xyz"RasterSupport.SetLicense(MY_LICENSE_FILE, MY_MedicalDEVELOPER_KEY);' Unlock Medical 3D supportDim MY_3DDEVELOPER_KEY As String = "123xyzabc"RasterSupport.SetLicense(MY_LICENSE_FILE, MY_3DDEVELOPER_KEY);' Create a new instance of the codecs class, which will be used to load the images.Dim _codecs As RasterCodecs = New RasterCodecs()' Create a new instance of the Medical Viewer, the layout will be divided to 2X2.Dim viewer As MedicalViewer = New MedicalViewer(2, 2)' Fit the view to the whole formviewer.Dock = DockStyle.Fill' Create the 3D control that will hold the 3D object.Dim control3D As Medical3DControl = New Medical3DControl()' Add and set 3D actioncontrol3D.AddAction(MedicalViewerActionType.WindowLevel)control3D.SetAction(MedicalViewerActionType.WindowLevel, MedicalViewerMouseButtons.Left, MedicalViewerActionFlags.Active)' Load any multi frame image (with number of frames more than 3) and add it to the Image property of the cell.Dim object3D As Medical3DObject = New Medical3DObject()' Add the newly created 3D object to the control.control3D.ObjectsContainer.Objects.Add(object3D)' Add the cell above to the MedicalViewer.viewer.Cells.Add(control3D)' add the viewer to the from control.Controls.Add(viewer)End Sub
void InitClass(){string MY_LICENSE_FILE = "d:\\temp\\TestLic.lic";// Unlock DICOM supportstring MY_DicomDEVELOPER_KEY = "xyz123abc";RasterSupport.SetLicense(MY_LICENSE_FILE, MY_DicomDEVELOPER_KEY);// Unlock Medical supportstring MY_MedicalDEVELOPER_KEY = "abc123xyz";RasterSupport.SetLicense(MY_LICENSE_FILE, MY_MedicalDEVELOPER_KEY);// Unlock Medical 3D supportstring MY_3DDEVELOPER_KEY = "123xyzabc";RasterSupport.SetLicense(MY_LICENSE_FILE, MY_3DDEVELOPER_KEY);// Create a new instance of the codecs class, which will be used to load the images.RasterCodecs _codecs = new RasterCodecs();// Create a new instance of the Medical Viewer, the layout will be divided to 2X2.MedicalViewer viewer = new MedicalViewer(2, 2);// Fit the view to the whole formviewer.Dock = DockStyle.Fill;// Create the 3D control that will hold the 3D object.Medical3DControl control3D = new Medical3DControl();// Add and set 3D actioncontrol3D.AddAction(MedicalViewerActionType.WindowLevel);control3D.SetAction(MedicalViewerActionType.WindowLevel, MedicalViewerMouseButtons.Left, MedicalViewerActionFlags.Active);// Load any multi frame image (with number of frames more than 3) and add it to the Image property of the cell.Medical3DObject object3D = new Medical3DObject();// Add the newly created 3D object to the control.control3D.ObjectsContainer.Objects.Add(object3D);// the cell above to the MedicalViewer.viewer.Cells.Add(control3D);// Add the viewer to the from control.Controls.Add(viewer);}
Call the InitClass method from inside the Form1 constructor, place the call add it after InitializeComponent().
Run the program now, you will see a 2X2 layout with one of the filled with an empty 3D object.
Now you will need to have a set of DICOMDIR files for the next step. We provide DICOMDIR sample files. Download the file from here (Download chest_ct_compressed_subset_for_3d_tutorial.zip), and extract the file to "C:\Leadtools_DICOMDIR".
Add the following code to your project right under the initclass(). This code will load a specific study and series from the downloaded DICOMDIR file. Note:There is an sample dialog "SeriesBrowser" that can be found in the \Examples\DotNet\<VB or CS>\Common folder, which will do all the work below. For more information, refer to the Main3DDemo source code.
Private _studyElement As DicomElementPrivate _seriesElement As DicomElementPrivate _seriesManager As MedicalViewerSeriesManagerPrivate _imageDataList As List(Of MedicalViewerImageData)Private doubleArray As Double()Private patientElement As DicomElementPrivate referenceUID As StringPrivate imageElement As DicomElementPrivate output As MedicalViewerSeriesManager' Find the study using the Study instance UID, and return it's DicomElement if the study is foundPrivate Function FindStudy(ByVal ds As DicomDataSet, ByVal studyInstanceUID As String) As DicomElement' get the parent element.Dim patientElement As DicomElement = ds.GetFirstKey(Nothing, True)Dim studyElement As DicomElement = NothingDim studyInformationElement As DicomElement = NothingDim studyID As StringstudyElement = ds.GetChildKey(patientElement)studyElement = ds.GetChildElement(studyElement, True)Do While Not studyElement Is NothingstudyInformationElement = ds.FindFirstElement(studyElement, DicomTag.StudyInstanceUID, True)If Not studyInformationElement Is Nothing ThenstudyID = ds.GetConvertValue(studyInformationElement)If studyID = studyInstanceUID ThenReturn studyInformationElementEnd IfEnd IfstudyElement = ds.GetNextKey(studyElement, True)studyElement = ds.GetChildElement(studyElement, True)LoopReturn NothingEnd Function' Find the series using the Series instance UID, and return it's DicomElement if the series is foundPrivate Function FindSeries(ByVal ds As DicomDataSet, ByVal studyElement As DicomElement, ByVal seriesInstanceUID As String) As DicomElementDim seriesElement As DicomElement = NothingDim seriesInformationElement As DicomElement = NothingDim seriesID As StringseriesElement = ds.GetChildKey(studyElement)seriesElement = ds.GetChildElement(seriesElement, True)Do While Not seriesElement Is NothingseriesInformationElement = ds.FindFirstElement(seriesElement, DicomTag.SeriesInstanceUID, True)If Not seriesInformationElement Is Nothing ThenseriesID = ds.GetConvertValue(seriesInformationElement)If seriesID = seriesInstanceUID ThenReturn seriesInformationElementEnd IfEnd IfseriesElement = ds.GetNextKey(seriesElement, True)seriesElement = ds.GetChildElement(seriesElement, True)LoopReturn NothingEnd Function' return the first frame file name of the series.Private Function GetFirstImageName(ByVal ds As DicomDataSet, ByVal seriesElement As DicomElement, ByVal directoryPath As String, <System.Runtime.InteropServices.Out()> ByRef imageElement As DicomElement) As StringDim imageIDElement As DicomElement = NothingimageElement = ds.GetChildKey(seriesElement)imageElement = ds.GetChildElement(imageElement, True)Do While Not imageElement Is NothingimageIDElement = ds.FindFirstElement(imageElement, DicomTag.ReferencedFileID, True)If Not imageIDElement Is Nothing ThenReturn directoryPath & "\" & ds.GetConvertValue(imageIDElement)End IfLoopReturn ""End Function' return the next frame file name of the series.Private Function GetNextImageName(ByVal ds As DicomDataSet, ByVal directoryPath As String, ByRef imageElement As DicomElement) As StringDim nextImageElement As DicomElement = NothingimageElement = ds.GetNextKey(imageElement, True)imageElement = ds.GetChildElement(imageElement, True)Do While Not imageElement Is NothingnextImageElement = ds.FindFirstElement(imageElement, DicomTag.ReferencedFileID, True)If Not imageElement Is Nothing ThenDim echoElement As DicomElement = ds.FindFirstElement(imageElement, DicomTag.EchoNumber, True)Return directoryPath & "\" & ds.GetConvertValue(nextImageElement)End IfLoopReturn ""End Function' This will load the dicom data set information and save it into a new instance of the class MedicalViewerImageData.Private Function AddImageToImageArray(ByVal ds As DicomDataSet, ByVal index As Integer, ByVal imagePath As String, <System.Runtime.InteropServices.Out()> ByRef echoNumber As Integer) As BooleanechoNumber = -1Dim imageData As MedicalViewerImageData = New MedicalViewerImageData()patientElement = ds.FindFirstElement(Nothing, DicomTag.ImagePositionPatient, True)doubleArray = ds.GetDoubleValue(patientElement, 0, 3)imageData.ImagePosition = Point3D.FromDoubleArray(doubleArray)imageData.Data = imagePathimageData.EchoNumber = echoNumberpatientElement = ds.FindFirstElement(Nothing, DicomTag.FrameOfReferenceUID, True)referenceUID = ds.GetConvertValue(patientElement)imageData.FrameOfReferenceUID = referenceUIDpatientElement = ds.FindFirstElement(Nothing, DicomTag.ImageOrientationPatient, True)imageData.ImageOrientation = ds.GetConvertValue(patientElement)patientElement = ds.FindFirstElement(Nothing, DicomTag.PixelSpacing, True)doubleArray = ds.GetDoubleValue(patientElement, 0, 2)imageData.PixelSpacing = New Point2D(CSng(doubleArray(0)), CSng(doubleArray(1)))patientElement = ds.FindFirstElement(Nothing, DicomTag.InstanceNumber, True)If Not patientElement Is Nothing ThenimageData.InstanceNumber = Convert.ToInt32(ds.GetConvertValue(patientElement))End IfpatientElement = ds.FindFirstElement(Nothing, DicomTag.InstanceCreationTime, True)If Not patientElement Is Nothing ThenimageData.CaptureTime = Convert.ToDateTime(ds.GetConvertValue(patientElement))End If_imageDataList.Add(imageData)Return TrueEnd FunctionPublic Function Load_Chest_CT_Compressed() As MedicalViewerSeriesManagerDim fileName As String = "C:\Leadtools_DICOMDIR\"Dim studyInstanceUID As String = "1.3.12.2.1107.5.99.2.5562.4.0.575080331232768"Dim seriesInstanceUID As String = "1.3.12.2.1107.5.99.2.5562.4.0.575080411334689"Return LoadSeries(fileName, studyInstanceUID, seriesInstanceUID, 158)End Function' this will load the series specified by the seriesInstanceUID and studyInstanceUID from the file specified in fileNamePrivate Function LoadSeries(ByVal fileName As String, ByVal studyInstanceUID As String, ByVal seriesInstanceUID As String, ByVal count As Integer) As MedicalViewerSeriesManagerDicomEngine.Startup()Dim ds As DicomDataSet = New DicomDataSet()ds.Load(fileName & "DICOMDIR", DicomDataSetLoadFlags.None)Dim directoryPath As String = fileName' Here the program will search for the study with the specified studyInstanceUID._studyElement = FindStudy(ds, studyInstanceUID)' Here the program will search for the series with the specified seriesInstanceUID._seriesElement = FindSeries(ds, _studyElement, seriesInstanceUID)' create a new instance of the MedicalViewerSeriesManager which will be used to sort the images, in order to create the correct 3D object._seriesManager = New MedicalViewerSeriesManager()' create an array of MedicalViewerImageData. This class will be used to save the frame information. This information will be used to sort the images._imageDataList = New List(Of MedicalViewerImageData)()Dim dicomDataSet As DicomDataSetDim imageIndex As IntegerDim imagePath As StringDim echoNumber As Integer = 0' Now the program will go through each frame in the seriesimagePath = GetFirstImageName(ds, _seriesElement, directoryPath, imageElement)imageIndex = 0Do While imageIndex < countTry' each image in the series will be loaded.dicomDataSet = New DicomDataSet()dicomDataSet.Load(imagePath, DicomDataSetLoadFlags.None)' The program will load it's information and save it into a new instance of the class MedicalViewerImageData.AddImageToImageArray(dicomDataSet, imageIndex, imagePath, echoNumber)dicomDataSet.Dispose()' go to the next image.imagePath = GetNextImageName(ds, directoryPath, imageElement)Catch exception As System.ExceptionSystem.Diagnostics.Debug.Assert(False, exception.Message)ThrowEnd TryimageIndex += 1Loop' sort the images, based on its data._seriesManager.Sort(_imageDataList)DicomEngine.Shutdown()Return _seriesManagerEnd Function
DicomElement _studyElement;DicomElement _seriesElement;MedicalViewerSeriesManager _seriesManager;List<MedicalViewerImageData> _imageDataList;double[] doubleArray;DicomElement patientElement;string referenceUID;DicomElement imageElement;MedicalViewerSeriesManager output;// Find the study using the Study instance UID, and return it's DicomElement if the study is foundprivate DicomElement FindStudy(DicomDataSet ds, string studyInstanceUID){// get the parent element.DicomElement patientElement = ds.GetFirstKey(null, true);DicomElement studyElement = null;DicomElement studyInformationElement = null;string studyID;studyElement = ds.GetChildKey(patientElement);studyElement = ds.GetChildElement(studyElement, true);while (studyElement != null){studyInformationElement = ds.FindFirstElement(studyElement,DicomTag.StudyInstanceUID,true);if (studyInformationElement != null){studyID = ds.GetConvertValue(studyInformationElement);if (studyID == studyInstanceUID)return studyInformationElement;}studyElement = ds.GetNextKey(studyElement, true);studyElement = ds.GetChildElement(studyElement, true);}return null;}// Find the series using the Series instance UID, and return it's DicomElement if the series is foundprivate DicomElement FindSeries(DicomDataSet ds, DicomElement studyElement, string seriesInstanceUID){DicomElement seriesElement = null;DicomElement seriesInformationElement = null;string seriesID;seriesElement = ds.GetChildKey(studyElement);seriesElement = ds.GetChildElement(seriesElement, true);while (seriesElement != null){seriesInformationElement = ds.FindFirstElement(seriesElement,DicomTag.SeriesInstanceUID,true);if (seriesInformationElement != null){seriesID = ds.GetConvertValue(seriesInformationElement);if (seriesID == seriesInstanceUID)return seriesInformationElement;}seriesElement = ds.GetNextKey(seriesElement, true);seriesElement = ds.GetChildElement(seriesElement, true);}return null;}// return the first frame file name of the series.private string GetFirstImageName(DicomDataSet ds, DicomElement seriesElement, string directoryPath, out DicomElement imageElement){DicomElement imageIDElement = null;imageElement = ds.GetChildKey(seriesElement);imageElement = ds.GetChildElement(imageElement, true);while (imageElement != null){imageIDElement = ds.FindFirstElement(imageElement,DicomTag.ReferencedFileID,true);if (imageIDElement != null){return directoryPath + "\\" + ds.GetConvertValue(imageIDElement);}}return "";}// return the next frame file name of the series.private string GetNextImageName(DicomDataSet ds, string directoryPath, ref DicomElement imageElement){DicomElement nextImageElement = null;imageElement = ds.GetNextKey(imageElement, true);imageElement = ds.GetChildElement(imageElement, true);while (imageElement != null){nextImageElement = ds.FindFirstElement(imageElement,DicomTag.ReferencedFileID,true);if (imageElement != null){DicomElement echoElement = ds.FindFirstElement(imageElement,DicomTag.EchoNumber,true);return directoryPath + "\\" + ds.GetConvertValue(nextImageElement);}}return "";}// This will load the dicom data set information and save it into a new instance of the class MedicalViewerImageData.private bool AddImageToImageArray(DicomDataSet ds, int index, string imagePath, out int echoNumber){echoNumber = -1;MedicalViewerImageData imageData = new MedicalViewerImageData();patientElement = ds.FindFirstElement(null,DicomTag.ImagePositionPatient,true);doubleArray = ds.GetDoubleValue(patientElement, 0, 3);imageData.ImagePosition = Point3D.FromDoubleArray(doubleArray);imageData.Data = imagePath;imageData.EchoNumber = echoNumber;patientElement = ds.FindFirstElement(null,DicomTag.FrameOfReferenceUID,true);referenceUID = ds.GetConvertValue(patientElement);imageData.FrameOfReferenceUID = referenceUID;patientElement = ds.FindFirstElement(null,DicomTag.ImageOrientationPatient,true);imageData.ImageOrientation = ds.GetConvertValue(patientElement);patientElement = ds.FindFirstElement(null,DicomTag.PixelSpacing,true);doubleArray = ds.GetDoubleValue(patientElement, 0, 2);imageData.PixelSpacing = new Point2D((float)doubleArray[0], (float)doubleArray[1]);patientElement = ds.FindFirstElement(null,DicomTag.InstanceNumber,true);if (patientElement != null)imageData.InstanceNumber = Convert.ToInt32(ds.GetConvertValue(patientElement));patientElement = ds.FindFirstElement(null,DicomTag.InstanceCreationTime,true);if (patientElement != null)imageData.CaptureTime = Convert.ToDateTime(ds.GetConvertValue(patientElement));_imageDataList.Add(imageData);return true;}public MedicalViewerSeriesManager Load_Chest_CT_Compressed(){string fileName = @"C:\Leadtools_DICOMDIR\";string studyInstanceUID = "1.3.12.2.1107.5.99.2.5562.4.0.575080331232768";string seriesInstanceUID = "1.3.12.2.1107.5.99.2.5562.4.0.575080411334689";return LoadSeries(fileName, studyInstanceUID, seriesInstanceUID, 158);}// this will load the series specified by the seriesInstanceUID and studyInstanceUID from the file specified in fileNameprivate MedicalViewerSeriesManager LoadSeries(string fileName, string studyInstanceUID, string seriesInstanceUID, int count){DicomEngine.Startup();DicomDataSet ds = new DicomDataSet();ds.Load(fileName + "DICOMDIR", DicomDataSetLoadFlags.None);string directoryPath = fileName;// Here the program will search for the study with the specified studyInstanceUID._studyElement = FindStudy(ds, studyInstanceUID);// Here the program will search for the series with the specified seriesInstanceUID._seriesElement = FindSeries(ds, _studyElement, seriesInstanceUID);// create a new instance of the MedicalViewerSeriesManager which will be used to sort the images, in order to create the correct 3D object._seriesManager = new MedicalViewerSeriesManager();// create an array of MedicalViewerImageData. This class will be used to save the frame information. This information will be used to sort the images._imageDataList = new List<MedicalViewerImageData>();DicomDataSet dicomDataSet;int imageIndex;string imagePath;int echoNumber = 0;// Now the program will go through each frame in the seriesimagePath = GetFirstImageName(ds, _seriesElement, directoryPath, out imageElement);for (imageIndex = 0; imageIndex < count; imageIndex++){try{// each image in the series will be loaded.dicomDataSet = new DicomDataSet();dicomDataSet.Load(imagePath, DicomDataSetLoadFlags.None);// The program will load it's information and save it into a new instance of the class MedicalViewerImageData.AddImageToImageArray(dicomDataSet, imageIndex, imagePath, out echoNumber);dicomDataSet.Dispose();// go to the next image.imagePath = GetNextImageName(ds, directoryPath, ref imageElement);}catch (System.Exception exception){System.Diagnostics.Debug.Assert(false, exception.Message);throw;}}// sort the images, based on its data._seriesManager.Sort(_imageDataList);DicomEngine.Shutdown();return _seriesManager;
Now you need to create a method to get the loaded images and create a 3D object out of them using the 3D memory efficiency method:
Private Sub Load3DObjectUsingDICOMDIR(ByVal object3D As Medical3DObject)' start up the codes, which allows loading various images.Dim _codecs As RasterCodecs = New RasterCodecs()' Load the CT dicom dir and return arranged stack of images.Dim output As MedicalViewerSeriesManager = Load_Chest_CT_Compressed()' Initialize loading the object. by specfiying the number of slices that will construct the 3D object.object3D.MemoryEfficientInit(output.Stacks(0).Items.Count)' loop through the images and add them one by one to the created 3D objectDim image As RasterImageDim depth As Integer = output.Stacks(0).Items.CountDim index As Integerindex = 0Do While index < depthimage = _codecs.Load(CStr(output.Stacks(0).Items(index).Data), 0, CodecsLoadByteOrder.BgrOrGrayOrRomm, 1, 1)object3D.MemoryEfficientSetFrame(image, index, output.Stacks(0).Items(index).ImagePosition, True)index += 1Loop' wrap up the creation process by calling this method.object3D.MemoryEfficientEnd(output.Stacks(0).Items(0).ImageOrientationArray, output.Stacks(0).PixelSpacing)End SubPrivate Sub Load2DCell(ByVal cell As MedicalViewerMultiCell)' start up the codes, which allows loading various images.Dim _codecs As RasterCodecs = New RasterCodecs()' Load the CT dicom dir and return arranged stack of images.Dim output As MedicalViewerSeriesManager = Load_Chest_CT_Compressed()' loop through the images and add them one by one to the final imageDim image As RasterImage = NothingDim depth As Integer = output.Stacks(0).Items.CountDim index As Integerindex = 0Do While index < depthIf image Is Nothing Thenimage = _codecs.Load(CStr(output.Stacks(0).Items(index).Data), 0, CodecsLoadByteOrder.BgrOrGrayOrRomm, 1, 1)Elseimage.AddPage(_codecs.Load(CStr(output.Stacks(0).Items(index).Data), 0, CodecsLoadByteOrder.BgrOrGrayOrRomm, 1, 1))End Ifindex += 1Loopcell.Image = imageEnd Sub
void Load3DObjectUsingDICOMDIR(Medical3DObject object3D){// start up the codes, which allows loading various images.RasterCodecs _codecs = new RasterCodecs();// Load the CT dicom dir and return arranged stack of images.MedicalViewerSeriesManager output = Load_Chest_CT_Compressed();// Initialize loading the object. by specfiying the number of slices that will construct the 3D object.object3D.MemoryEfficientInit(output.Stacks[0].Items.Count);// loop through the images and add them one by one to the created 3D objectRasterImage image;int depth = output.Stacks[0].Items.Count;int index;for (index = 0; index < depth; index++){image = _codecs.Load((string)output.Stacks[0].Items[index].Data, 0, CodecsLoadByteOrder.BgrOrGrayOrRomm, 1, 1);object3D.MemoryEfficientSetFrame(image, index, output.Stacks[0].Items[index].ImagePosition, true);}// wrap up the creation process by calling this method.object3D.MemoryEfficientEnd(output.Stacks[0].Items[0].ImageOrientationArray, output.Stacks[0].PixelSpacing);}void Load2DCell(MedicalViewerMultiCell cell){// start up the codes, which allows loading various images.RasterCodecs _codecs = new RasterCodecs();// Load the CT dicom dir and return arranged stack of images.MedicalViewerSeriesManager output = Load_Chest_CT_Compressed();// loop through the images and add them one by one to the final imageRasterImage image = null;int depth = output.Stacks[0].Items.Count;int index;for (index = 0; index < depth; index++){if (image == null){image = _codecs.Load((string)output.Stacks[0].Items[index].Data, 0, CodecsLoadByteOrder.BgrOrGrayOrRomm, 1, 1);}elseimage.AddPage(_codecs.Load((string)output.Stacks[0].Items[index].Data, 0, CodecsLoadByteOrder.BgrOrGrayOrRomm, 1, 1));}cell.Image = image;}
Finally, add the following line at the end of the InitClass method. This will call the above method which will load the DICOMDIR files, arrange them and create a 3D object out of them.
Load3DObjectUsingDICOMDIR(object3D)
Load3DObjectUsingDICOMDIR(object3D);
Run the application. If you have done everything successfully, you will be able to see a 2X2 layout of the MedicalViewer. The top left portion contains part of a human chest rendered in as a 3D object.
Note: For more information on how to acquire the above unlock keys, please contact LEAD Technologies support.
Note: If you encounter an "Invalid File Format" or "Feature Not Supported" exception, please refer to the topic Invalid File Format/Feature Not Supported.
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